Find your gene regulatory pathways, biomarkers, and drug targets in a few clicks
No-coding
Bioinformatics
Academy
For molecular biologists and clinical researchers
Choose your training
geneXplain platform API
Software demo: Coffee break with TRANSFAC
This session will be dedicated to the topic of Application Programming Interfaces (APIs). Prof. Dr. Alexander Kel and Kamilya Altynbekova will discuss what an API is, when it is used, and what advantages does it offer to your analysis pipeline. The following main questions will be in the focus of this seminar:
- What is an API and why is it used?
- What kind of APIs are available for the geneXplain platform?
- Where can you get the geneXplainR package?
- How to connect to your existing account in geneXplain platform via API?
- How can I use the functionalities of geneXplain platform in my R scripts?
Schedule
ATAC-seq, CUT&RUN and Enhancers
Q&A: Coffee break with TRANSFAC
In this webinar Dr. Alexander Kel, the CEO and CSO of geneXplain GmbH, will address the basic principles of epigenomics data analysis and will analyse ATAC-seq, ChIP-seq and CUT&RUN data for enriched transcription factor binding sites, composite modules and upstream regulators. The following main questions will be in the focus of this seminar:
- Identification of differentially accessible chromatin regions
- Analyzing differentially accessible peaks for enriched TF-binding sites and composite modules
- Finding enhancers by combining ATAC-seq with RNA-seq data
- Upstream analysis for master regulators
Schedule
How to find tissue-specific transcription factor (TF) target genes
Q&A: Coffee break with TRANSFAC
In this webinar Prof. Dr. Alexander Kel will share with you the latest intriguing insights of gene regulation mechanisms. He will demonstrate how to perform tissue-specific gene regulation analysis and find enriched motifs using the TRANSFAC database and its MATCH Suite tool. The following main questions will be in the focus of this seminar:
- How to find tissue-specific TF target genes?
- Why do you need TF binding sites?
- Conserved TF binding sites – how important are they?
- PWMs – is that all? What else?
Schedule
Key benefits
No-coding bioinformatics
Perform cutting edge bioinformatics analysis in a user-friendly interface with no programming skills needed
Multi-omics
Learn how to process and integrate various omics data types in your analysis
Promoter analysis
Become the gene regulation expert with deep understanding of transcription factors interplay in various conditions
Pathway analysis
Discover the master regulators governing the studied biological processes through intracellular signaling pathways
Disease molecular mechanisms
Identify prospective biomarkers and drug targets for the pathologies of your interest by performing integrated promoter and pathway analysis
Gold standard tools and databases
Learn how to use the best-in-class knowledge bases on genes, proteins, transcription factors, pathways, drugs, and their targets, together with integrated tools
Testimonials
Coming soon
Promoter hunting with TRANSFAC
Hands-on training
Paid course, €299 per seat before VAT. Date and time will be announced soon.
In this course we will learn how to apply TRANSFAC and study promoters and enhancers.
The following questions will be covered:
My way from promoters to pathways
Paid course, €299 per seat before VAT. Date and time will be announced soon.
In this course we will:
Our lecturers
